• Biodegradable plastics in Mediterranean coastal environments feature contrasting microbial succession 

      de Vogel, Fons A.; Goudriaan, Maaike; Zettler, Erik R.; Niemann, Helge; Eich, Andreas; Weber, Miriam; Lott, Christian; Amaral-Zettler, Linda A. (Journal article; Tidsskriftartikkel; Peer reviewed, 2024-04-08)
      Plastic pollution of the ocean is a top environmental concern. Biodegradable plastics present a potential “solution” in combating the accumulation of plastic pollution, and their production is currently increasing. While these polymers will contribute to the future plastic marine debris budget, very little is known still about the behavior of biodegradable plastics in different natural environments. ...
    • Biogeochemical Consequences of Nonvertical Methane Transport in Sediment Offshore Northwestern Svalbard 

      Treude, Tina; Krause, Stefan; Steinle, Lea; Burwicz, Ewa B.; Hamdan, L.J.; Niemann, Helge; Feseker, Tomas; Liebetrau, Volker; Krastel, Sebastian; Berndt, Christian (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-03-21)
      A site at the gas hydrate stability limit was investigated offshore northwestern Svalbard to study methane transport in sediment. The site was characterized by chemosynthetic communities (sulfur bacteria mats, tubeworms) and gas venting. Sediments were sampled with in situ porewater collectors and by gravity coring followed by analyses of porewater constituents, sediment and carbonate geochemistry, ...
    • Biogeochemical evidence of anaerobic methane oxidation on active submarine mud volcanoes on the continental slope of the Canadian Beaufort Sea 

      Lee, Dong-Hun; Kim, Jung-Hyun; Lee, Yung Mi; Stadnitskaia, Alina; Jin, Young Keun; Niemann, Helge; Kim, Young-Gyun; Shin, Kyung-Hoon (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-12-20)
      In this study, we report lipid biomarker patterns and phylogenetic identities of key microbial communities mediating anaerobic oxidation of methane (AOM) in active mud volcanoes (MVs) on the continental slope of the Canadian Beaufort Sea. The carbon isotopic compositions (δ13C) of sn-2- and sn-3-hydroxyarchaeol showed the highly 13C-depleted values (−114 ‰ to −82 ‰) associated with a steep depletion ...
    • Biomarker and isotopic composition of seep carbonates record environmental conditions in two Arctic methane seeps 

      Yao, Haoyi; Panieri, Giuliana; Lehmann, Moritz F; Himmler, Tobias; Niemann, Helge (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-02-12)
      Present-day activity of cold-seeps in the ocean is evident from direct observations of methane emanating from the seafloor, the presence of chemosynthetic organisms, or the quantification of gas concentrations in the water column and pore water solutes. Verifying past cold seep activity and biogeochemical characteristics is more challenging but may be reconstructed from proxy records of authigenic ...
    • Chemosynthesis influences food web and community structure in high-Arctic benthos 

      Åström, Emmelie; Carroll, Michael; Sen, Arunima; Niemann, Helge; Ambrose Jr., William G.; Lehmann, Moritz F; Carroll, JoLynn (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-10-25)
      Cold seeps are locations where seafloor communities are influenced by the seepage of methane and other reduced compounds from the seabed. We examined macro-infaunal benthos through community analysis and trophic structure using stable isotope analysis at 3 seep locations in the Barents Sea. These seeps were characterized by high densities of the chemosymbiotic polychaetes Siboglinidae, clade Frenulata ...
    • Compositional differences in dissolved organic matter between Arctic cold seeps versus non-seep sites at the Svalbard continental margin and the Barents sea 

      Sert, Muhammed Fatih; D’Andrilli, Juliana; Gründger, Friederike; Niemann, Helge; Granskog, Mats; Pavlov, Alexey K.; Ferré, Benedicte; Silyakova, Anna (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-12-07)
      Dissociating gas hydrates, submerged permafrost, and gas bearing sediments release methane to the water column from a multitude of seeps in the Arctic Ocean. The seeping methane dissolves and supports the growth of aerobic methane oxidizing bacteria (MOB), but the effect of seepage and seep related biogeochemical processes on water column dissolved organic matter (DOM) dynamics is not well ...
    • Compositions of dissolved organic matter in the ice-covered waters above the Aurora hydrothermal vent system, Gakkel Ridge, Arctic Ocean 

      Sert, Muhammed Fatih; Niemann, Helge; Reeves, Eoghan; Granskog, Mats A.; Hand, Kevin P.; Kekäläinen, Timo; Jänis, Janne; Rossel, Pamela; Ferré, Benedicte; Silyakova, Anna; Gründger, Friederike (Journal article; Tidsskriftartikkel; Peer reviewed, 2022-04-20)
      Hydrothermal vents modify and displace subsurface dissolved organic matter (DOM) into the ocean. Once in the ocean, this DOM is transported together with elements, particles, dissolved gases and biomass along with the neutrally buoyant plume layer. Considering the number and extent of actively venting hydrothermal sites in the oceans, their contribution to the oceanic DOM pool may be substantial. ...
    • Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea 

      de Groot, Tim René; Mol, Anne Margriet; Mesdag, Katherine; Ramond, Pierre; Ndhlovu, Rachel; Engelmann, Julia Catherine; Röckmann, Thomas; Niemann, Helge (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-09-25)
      The Wadden Sea is a coastal system along the fringe of the land–sea borders of Denmark, Germany and the Netherlands. The Wadden Sea is extremely productive and influenced by strong variations in physical and biological forcing factors that act on timescales of hours to seasons. Productive coastal seas are known to dominate the ocean's methane emission to the atmosphere, but knowledge of controls and ...
    • Effects of climate change on methane emissions from seafloor sediments in the Arctic Ocean: A review 

      James, Rachel; Bousquet, Philippe; Bussmann, Ingeborg; Haeckel, Matthias; Kipfer, Rolf; Leifer, Ira; Niemann, Helge; Ostrovsky, Ilia; Piskozub, Jacek; Rehder, Gregor; Treude, Tina; Vielstadte, Lisa; Greinert, Jens (Journal article; Tidsskriftartikkel; Peer reviewed, 2016-05-17)
      Large quantities of methane are stored in hydrates and permafrost within shallow marine sediments in the Arctic Ocean. These reservoirs are highly sensitive to climate warming, but the fate of methane released from sediments is uncertain. Here, we review the principal physical and biogeochemical processes that regulate methane fluxes across the seabed, the fate of this methane in the water column, ...
    • Effects of low oxygen concentrations on aerobic methane oxidation in seasonally hypoxic coastal waters 

      Steinle, Lea; Maltby, Johanna; Treude, Tina; Kock, Annette; Bange, Hermann W.; Engbersen, Nadine; Zopfi, Jakob; Lehmann, Moritz F.; Niemann, Helge (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-03-29)
      Coastal seas may account for more than 75 % of global oceanic methane emissions. There, methane is mainly produced microbially in anoxic sediments from which it can escape to the overlying water column. Aerobic methane oxidation (MOx) in the water column acts as a biological filter, reducing the amount of methane that eventually evades to the atmosphere. The efficiency of the MOx filter is potentially ...
    • Elevated methane alters dissolved organic matter composition in the Arctic Ocean cold seeps 

      Sert, Muhammed Fatih; Schweitzer, Hannah; de Groot, Tim R.; Kekäläinen, Timo; Jänis, Janne; Bernstein, Hans Christopher; Ferré, Benedicte; Gründger, Friederike; Kalenitchenko, Dimitri Stanislas Desire; Niemann, Helge (Journal article; Tidsskriftartikkel; Peer reviewed, 2023-12-15)
      Cold seeps release methane (CH<sub>4</sub>) from the seafloor to the water column, which fuels microbially mediated aerobic methane oxidation (MOx). Methane-oxidising bacteria (MOB) utilise excess methane, and the MOB biomass serves as a carbon source in the food web. Yet, it remains unclear if and how MOx modifies the composition of dissolved organic matter (DOM) in cold seeps. We investigated MOx ...
    • The fate of plastic in the ocean environment – a minireview 

      Wayman, Chloe; Niemann, Helge (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-01-14)
      The presence of plastics in the marine environment poses a threat to ocean life and has received much scientific and public attention in recent years. Plastics were introduced to the market in the 1950s and since then, global production figures and ocean plastic littering have increased exponentially. Of the 359 million tonnes (Mt) produced in 2018, an estimated 14.5 Mt has entered the ocean. In ...
    • Fracture-controlled fluid transport supports microbial methane-oxidizing communities at Vestnesa Ridge 

      Yao, Haoyi; Hong, Wei-Li; Panieri, Giuliana; Sauer, Simone; Torres, Marta E.; Lehmann, Moritz F.; Gründger, Friederike; Niemann, Helge (Journal article; Peer reviewed, 2019-05-29)
      We report a rare observation of a mini-fracture in near-surface sediments (30 cm below the seafloor) visualized using a rotational scanning X-ray of a core recovered from the Lomvi pockmark, Vestnesa Ridge, west of Svalbard (1200 m water depth). Porewater geochemistry and lipid biomarker signatures revealed clear differences in the geochemical and biogeochemical regimes of this core compared with ...
    • The Impact of Methane on Microbial Communities at Marine Arctic Gas Hydrate Bearing Sediment 

      Carrier, Vincent; Svenning, Mette Marianne; Gründger, Friederike; Niemann, Helge; Dessandier, Pierre-Antoine; Panieri, Giuliana; Kalenitchenko, Dimitri (Journal article; Tidsskriftartikkel; Peer reviewed, 2020-09-24)
      Cold seeps are characterized by high biomass, which is supported by the microbial oxidation of the available methane by capable microorganisms. The carbon is subsequently transferred to higher trophic levels. South of Svalbard, five geological mounds shaped by the formation of methane gas hydrates, have been recently located. Methane gas seeping activity has been observed on four of them, ...
    • Labilibaculum manganireducens gen. nov., sp. nov. and Labilibaculum filiforme sp. nov., Novel Bacteroidetes Isolated from Subsurface Sediments of the Baltic Sea 

      Vandieken, Verona; Marshall, Ian P.G.; Niemann, Helge; Engelen, Bert; Cypionka, Heribert (Journal article; Tidsskriftartikkel; Peer reviewed, 2018-01-05)
      Microbial communities in deep subsurface sediments are challenged by the decrease in amount and quality of organic substrates with depth. In sediments of the Baltic Sea, they might additionally have to cope with an increase in salinity from ions that have diffused downward from the overlying water during the last 9000 years. Here, we report the isolation and characterization of four novel bacteria ...
    • Manganese/iron‐supported sulfate‐dependent anaerobic oxidation of methane by archaea in lake sediments 

      Su, Guangyi; Zopfi, Jakob; Yao, Haoyi; Steinle, Lea; Niemann, Helge; Lehmann, Moritz F (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-11-04)
      Anaerobic oxidation of methane (AOM) by methanotrophic archaea is an important sink of this greenhouse gas in marine sediments. However, evidence for AOM in freshwater habitats is rare, and little is known about the pathways, electron acceptors, and microbes involved. Here, we show that AOM occurs in anoxic sediments of a sulfate‐rich lake in southern Switzerland (Lake Cadagno). Combined AOM‐rate ...
    • Methane- and dissolved organic carbon-fueled microbial loop supports a tropical subterranean estuary ecosystem 

      Brankovits, D.; Pohlman, J.W.; Niemann, Helge; Leigh, M.B.; Leewis, M.C.; Becker, K.W.; Iliffe, F.A.; Lehmann, M.F.; Phillips, B. (Journal article; Tidsskriftartikkel; Peer reviewed, 2017-11-28)
      Subterranean estuaries extend inland into density-stratified coastal carbonate aquifers containing a surprising diversity of endemic animals (mostly crustaceans) within a highly oligotrophic habitat. How complex ecosystems (termed anchialine) thrive in this globally distributed, cryptic environment is poorly understood. Here, we demonstrate that a microbial loop shuttles methane and dissolved organic ...
    • Methane-fuelled biofilms predominantly composed of methanotrophic ANME-1 in Arctic gas hydrate-related sediments 

      Gründger, Friederike; Carrier, Vincent; Svenning, Mette Marianne; Panieri, Giuliana; Vonnahme, Tobias R.; Klasek, Scott; Niemann, Helge (Journal article; Tidsskriftartikkel; Peer reviewed, 2019-07-05)
      Sedimentary biofilms comprising microbial communities mediating the anaerobic oxidation of methane are rare. Here, we describe two biofilm communities discovered in sediment cores recovered from Arctic cold seep sites (gas hydrate pingos) in the north-western Barents Sea, characterized by steady methane fluxes. We found macroscopically visible biofilms in pockets in the sediment matrix at the depth ...
    • Methanotrophs: Discoveries, Environmental Relevance, and a Perspective on Current and Future Applications 

      Guerrero-Cruz, Simon; Vaksmaa, Annika; Horn, Marcus A.; Niemann, Helge; Pijuan, Maite; Ho, Adrian (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-05-14)
      Methane is the final product of the anaerobic decomposition of organic matter. The conversion of organic matter to methane (methanogenesis) as a mechanism for energy conservation is exclusively attributed to the archaeal domain. Methane is oxidized by methanotrophic microorganisms using oxygen or alternative terminal electron acceptors. Aerobic methanotrophic bacteria belong to the phyla Proteobacteria ...
    • Microbial activity, methane production, and carbon storage in Early Holocene North Sea peats 

      Lippmann, Tanya J. R.; 't Zandt, Michiel H. in; Van der Putten, Nathalie N. L.; Busschers, Freek S.; Hijma, Marc P.; van der Velden, Pieter; de Groot, Tim; van Aalderen, Zicarlo; Meisel, Ove H.; Slomp, Caroline P.; Niemann, Helge; Jetten, Mike S. M.; Dolman, Han A. J.; Welte, Cornelia U. (Journal article; Tidsskriftartikkel; Peer reviewed, 2021-10-11)
      <p>Northern latitude peatlands act as important carbon sources and sinks, but little is known about the greenhouse gas (GHG) budgets of peatlands that were submerged beneath the North Sea during the last glacial–interglacial transition. <p>We found that whilst peat formation was diachronous, commencing between 13 680 and 8360 calibrated years before the present, stratigraphic layering and local ...